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Benign and Malignant Tumors

A tumor is an abnormal growth of cells that serves no purpose. A tumor can be benign, which is harmless, or malignant, which is cancer. A malignant tumor tends to be bigger compared to a benign tumor, as you've found in one of Week 7's problems.

The following is a simulated data containing 1000 observations of renal cortical tumors, a type of kidney tumors. The data can be downloaded here and then loaded to R using the command

tumor <- read.csv("tumor045.csv")

The first column, named 'size', is the tumor size in cm. The second column, named 'y', is an integer indicating whether the tumor is benign (y=0) or malignant (y=1).

Enter all of your answers in the following questions to 3 decimal places, unless stated otherwise.

a. Null model: what proportion of the tumors in the data set are malignant?

 Tries 0/3

b. Fit a logistic regression model predicting the probability of a tumor being malignant from 'size'.

ln(odds) = + × size

 Tries 0/5

c. How much do the estimated odds of the tumor being malignant change if the tumor increases in size by 1 cm? In other words what is the odds ratio for 'size'?

 Tries 0/3

The rest of questions will show up after you finish (a)-(c).